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Science & Engineering Libraries
Do you need a fast, easy way to access spectra and identify an unknown compound?
Wiley Spectra Lab has acquired spectral data from Wiley, Wiley-VCH, Bio-Rad Sadtler and others to present the world’s largest collection of curated spectral data. Current licensing includes C-NMR, H-NMR and X-NMR spectroscopies.
You can search Wiley Spectra Lab in OskiCat or access it through the Chemistry and Chemical Engineering Library Guide under Properties and Data. Contact the Chemical Information Librarian, Kortney Rupp with any issues or questions.
Whether you’re hopping in an Oregon-bound car to catch the total solar eclipse in Salem, boarding a plane for central Wyoming to watch the moon’s shadow pass over Casper, or just staying put to catch a partial view right here in the Bay Area, the library has tons of great information to help you enjoy this rare celestial event. Make sure to check out our Maps and More Guide about the eclipse (and solar eclipses in general). Read Chasing Eclipses (pictured above), a 1929 account of the total solar eclipses of 1905, 1914, and 1925. See this 1957 report from the Georgetown Observatory about eclipses by Vera Rubin (who, incidentally, helped make the case for the existence of dark matter, as described in this New York Times profile). And for a literary accounting of a total solar eclipse, find a copy of Annie Dillard’s Teaching a Stone to Talk and and (re)read her essay about her experience watching (and feeling) the sun disappear behind the moon in central Washington on February 26, 1979:
What you see in an eclipse is entirely different from what you know. It is especially different for those of us whose grasp of astronomy is so frail that, given a flashlight, a grapefruit, two oranges, and fifteen years, we still could not figure out which way to set the clocks for Daylight Saving Time. Usually it is a bit of a trick to keep your knowledge from blinding you. But during an eclipse it is easy. What you see is much more convincing than any wild-eyed theory you may know.
- WYSIWYG editor
- publisher relationships for streamlined submission process
- integration with Mendeley (which we also have an institutional subscription to!)
- track changes feature
- robust real-time collaborative editing environment
- syncing to Github (ask about UC-Berkeley’s instance!)
UC Berkeley researchers now have full online access to standards issued by the American Society of Heating, Refrigerating and Air Conditioning Engineers (ASHRAE). ASHRAE Standards and Guidelines are widely used by researchers and professionals in the design and maintenance of indoor environments and those interested in refrigeration processes. Access is provided through the Techstreet Enterprise platform and requires the proxy or VPN from off-campus.
In addition to the Standards and Guidelines, ASHRAE also publishes a series of Transactions and Handbooks. Interested in other ASHRAE publications? Check OskiCat for access or contact a librarian for help!
Github has become ubiquitous in the coding world and, with the advent of data science and computation in a slew of other disciplines, researchers are turning to the version control repository and hosting service. Google uses it, Microsoft uses it, and it’s on the list of the top 100 most popular sites on Earth. As a librarian and a member of the Research Data Management team, I often get the question: “Can I archive my code in my Github repository?” From the research data management perspective, the answer is a little sticky.
The terms “archive” and “repository” from GitHub mean something very different than their definitions from a research data management perspective. For example, in GitHub, a repository “contains all of the project files…and stores each file’s revision history.” Archiving content on GitHub means that your repository will stay on GiHub until you choose to remove it (or if GitHub receives a DMCA takedown notice, or if it violates their guidelines or terms of service).
For librarians, research data managers, and many funders and publishers, archiving content in a repository requires more stringent requirements. For example, Dryad, a commonly known repository, requires those who wish to remove content to go through a lengthy process proving that work has been infringed, or is not in compliance of the law (read more about removing content from Dryad here). Most importantly, Dryad (and many other repositories) take specific steps to preserve the research materials. For example:
* persistent identification
* fixity checks
* multiple copies are kept in a variety of storage sites
A good repository provides persistent access to materials, enables discovery, and does not guarantee, but takes multiple steps to prevent data loss.
So, how can you continue to work efficiently through GitHub and adhere to good archival practices? GitHub links up with Zenodo, a repository based out of CERN. Data files are stored at CERN with another site in Budapest. All data is backed-up on a daily basis with regular fixity and authenticity checks. Zenodo assigns a digital object identifier to your code, making it persistently identifiable and discoverable. Check out this guide on Making Your Code Citable for more information on linking your GitHub with Zenodo. Zenodo isn’t perfect and there are a few limitations, including a max file size of 50 GB. Read more about their policies here.
UC-Berkeley has its own institutional version of GitHub, which means that Berkeley development teams and individual contributors can now have private repositories (and private, shared repositories within the Berkeley domain). If you’d like access, please email firstname.lastname@example.org. Additionally, we have institutional subscriptions to Overleaf and ShareLaTeX, both of which integrate with GitHub.
Please contact email@example.com if you’d like more information about archiving your code on GitHub.
- you may have entered into a research project mid-grant and are unaware of the data management plan that was included in the grant proposal
- the data management plan that was included in the grant application is not being followed
- you’re not sure how funder mandates line up with publisher requirements
- the language that publishers include about data sharing or publishing aren’t straight forward
- you know that you’re supposed to make your data public, but you don’t know where to do this or how to do this
- data sharing and data citation is encouraged
- data sharing and evidence of data sharing encouraged
- data sharing encouraged and statements of data availability required
- data sharing, evidence of data sharing and peer review of data required
- Research Data Policy Type 1 is the most lenient by encouraging data citation and sharing. I like to think of policy 1 as “data sharing lite,” because Springer Nature provides you with information about how to share and cite data, but you don’t necessarily have to. A few titles that fit into this category are: Academic Questions, Accreditation and Quality Assurance, Aesthetic Plastic Surgery, Contemporary Islam, and Journal of Happiness Studies.
- Research Data Policy Type 2 requires the authors to be more open with their relevant raw data by implying that the data will be available to any researcher who would like to reuse them for non-commercial purposes (barring confidentiality issues). This policy falls somewhere between “optional” and “mandatory.” The publisher is telling its journal policy 2 readers that this data is freely available for them to reuse, therefore warning, or preparing, the authors that they may be asked for their data. The easiest way to handle requests like this is to make is publicly available, with a citation and assigned digital object identifier in a repository. A few examples of type 2 journals include: Agronomy for Sustainable Development, BioEnergy Research, Brain Imaging and Behavior, and Journal of Geovisualization and Spatial Analysis
- Research Data Policy Type 3 is geared specifically for journals that publish research on the life sciences. When an author submits to policy 3 journals, they are strongly encouraged to deposit data in repositories. It is implied that all raw data is freely available (again, barring confidentiality issues) to any researcher who requests it. For policies 1 and 2, authors may deposit data in general repositories. However, for policy 3, researchers must deposit specific types of data in a list of prescribed repositories. For example, DNA and RNA sequencing data must be deposited in the NCBI Trace Archive or the NCBI Sequence Read Archive (SRA). A few examples of type 3 journals include: Journal of Hematology and Oncology, Nature Cell Biology, and Nature Chemistry.
- Research Data Policy Type 4 requires that all of the datasets for the paper’s conclusion must be available to reviewers and readers. The datasets have to be available in repositories prior to the peer review process (or be made available in supplementary material) and is conditional upon publication that data is in the appropriate repository. Examples of type 4 journals include BMC Biology, Genome Biology, and Retrovirology.
The Kresge Engineering Library will be one of the host sites for VR @ Berkeley, a student group that brings virtual reality to the campus community. By working with industry and UC-Berkeley researchers, VR @ Berkeley makes virtual reality an accessible experience. Each year, members of the group focus on a wide range of projects that bend the intersection between our physical realities and the virtual. Their work spans many applications including: changing the way we read and interact with textbooks, allowing medical workers in the field communicate with doctors in a more intuitive manner, and a virtual experience of our iconic, 61 bell Campanile.
During Cal Day, the Kresge Engineering Library will be hosting Project Landships, a multiplayer tank combat simulator. Players can work together as a crew to aim, shoot, drive, and spot. The experience emulates a WWII Sherman Firefly Tank.
Check out other VR @ Berkeley Projects on Cal Day at the following locations:
1. Kresge Engineering Library
2. ESS Patio
3. Jacobs Hall
4. Sproul Plaza
5. The House (Bancroft)
6. Moffitt Library
Want to make your searches for biomedical information more effective and efficient? The Library’s Life and Health Sciences Division is holding a hands-on workshop on advanced features of PubMed, including:
- How to use filters to focus search results on specific article types, publication dates and more
- How to add field tags to find articles by author, title, journal, and other criteria
- How Medical Subject Headings (MeSH) can help you find additional relevant information
- How to use My NCBI to save searches, set up alerts, and display results in your preferred format
- How PubMed links to information in other NCBI resources
Location: Bioscience Library Training Room, 2101 VLSB
Date: Wednesday April 12
Time: 12 – 1 pm
No pre-registration is required; all are welcome.
Questions? Please contact Elliott Smith at firstname.lastname@example.org
EndNote (X8): Citation & Document Manager: Hands-on Workshop
Use EndNote to manage your documents, organize your citations, import from databases, add pdfs, insert footnotes into your Word docs, and format bibliographies in any style (for Windows and Mac).
This hands-on workshop will cover getting started, adding citations, get full text, insert footnotes and create bibliographies.
The Bioscience Library Training room is equipped with PCs and EndNote X8, you are welcome to bring your laptop.
Open to all interested students and researchers; no registration is required.
Add this workshop to my bCal
Questions? Contact email@example.com
Date: Tuesday, April 4.
Time: 4 – 5pm
Location: Bioscience Library Training room, 2189 VLSB (inside the library).
Looking for an easy way to manage your research? The Library has you covered. We now offer premium access to three products — Overleaf, Mendeley, & ShareLaTeX — that make collaborative writing and citing in the engineering and physical sciences much easier. Sign up and learn more.
- Overleaf is an online collaborative LaTeX editor with integrated real-time preview. It offers templates for arXiv and many journal publishers to help get you started, and it can also be linked to other services such as Mendeley, Git, and Plot.ly. A pro account (avaialable for free when you sign up with your Berkeley email) will provide up to 10GB storage space, 500 files per project, full project history, and the ability to save to Dropbox.
- ShareLaTeX is also an online collaborative LaTeX editor. It too offers templates for arXiv and many journal publishers. With a premium account, you will get unlimited collaborators, full project history, and the ability to sync with Dropbox and Github.
- Mendeley is a reference manager and academic social network that allows you to organize your references across multiple devices, automatically generate bibliographies, and share references with collaborators online. Your institutional account will provide up to 5GB personal library space, 20GB shared library space, 25 collaborators in private groups, and unlimited private groups.